XML_data_formats/Settings

Settings XML File

This file contains settings for the MCMC algorithm:

burn: the burn-in value for the MCMC algorithm - default value 10% of iterations.
thin: setting thin=k selects every kth iteration starting with the first.
block: inputted data sets are split into separate blocks, and then treated sequentially.
simulationMethod: the simulator used by calibayes.
simulatorWSDLLocation: the location of the wsdl file for calibayes to use. If internal, then calibayes uses it's own WSDL file.
see R help file: createSettings.

XML File

   1 <parameterTuning>
   2   <burn value="10000"/>
   3   <thin value="10"/>
   4   <block value="3"/>
   5   <simulationMethod value="copasi-stochastic"/>
   6   <simulatorWSDLLocation value="internal"/> 
   7 </parameterTuning>

CalibayesWiki: XML_data_formats/Settings (last edited 2009-09-17 12:52:03 by YuhuiChen)